Visualization of phage genomic data: Comparative genomics and publication-quality diagrams

Dann Turner, John Sutton, Darren M. Reynolds, Eby M. Sim, Nicola K. Petty

Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review

2 Citations (Scopus)

Abstract

The presentation of bacteriophage genomes as diagrams allows the location and organization of features to be communicated in a clear and effective manner. A wide range of software applications are available for the clear and accurate visualization of genomic data. Several of these applications incorporate comparative analysis tools, allowing for insertions, deletions, rearrangements and variations in syntenic regions to be visualized. In this chapter, freely available software and resources for the generation of high-quality graphical maps of bacteriophage genomes are listed and discussed.

Original languageEnglish
Title of host publicationMethods in Molecular Biology
PublisherHumana Press Inc.
Pages239-260
Number of pages22
DOIs
Publication statusPublished - 2018

Publication series

NameMethods in Molecular Biology
Volume1681
ISSN (Print)1064-3745

Keywords

  • Comparative genomics
  • Genomes
  • Phage
  • Software
  • Visualization

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