Yersinia canariae sp. Nov., isolated from a human yersiniosis case

Scott V. Nguyen*, David Greig, Daniel Hurley, Orla Donoghue, Yu Cao, Evonne McCabe, Molly Mitchell, Kirsten Schaffer, Claire Jenkins, Séamus Fanning

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

4 Citations (Scopus)

Abstract

A Gram-negative rod from the Yersinia genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technologies (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within Yersinia, despite biochemical similarities to Yersinia enterocolitica. The 16S ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chro-mosome is CP043727. The type strain is SRR7544370T (=NCTC 14382T /=LMG 31573T).

Original languageEnglish
Article number004047
Pages (from-to)2382-2387
Number of pages6
JournalInternational Journal of Systematic and Evolutionary Microbiology
Volume70
Issue number4
DOIs
Publication statusPublished - 11 Mar 2020

Bibliographical note

Funding Information: This work received no specific grant from any funding agency.

Open Access: Free to read, but no Open Access licence

Publisher Copyright: © 2020 Crown copyright

Citation: Nguyen, Scott V., et al. "Yersinia canariae sp. nov., isolated from a human yersiniosis case." International journal of systematic and evolutionary microbiology 70.4 (2020): 2382-2387.

DOI: https://doi.org/10.1099/ijsem.0.004047

Keywords

  • MinION
  • Oxford Nanopore Technologies
  • Taxonomy
  • Whole genome sequencing
  • Yersinia canariae
  • Yersiniosis

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